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    LOC4348242 probable cinnamyl alcohol dehydrogenase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348242, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4348242
    Gene description
    probable cinnamyl alcohol dehydrogenase 1
    Locus tag
    OSNPB_100194200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CAD1; OsCAD1; OsJ_30963
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    Genomic context

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    See LOC4348242 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (6688410..6691747)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (6540759..6544161)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid transfer protein GPI-anchored 1 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC107279197 Neighboring gene uncharacterized LOC136353795 Neighboring gene uncharacterized LOC136353794

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable cinnamyl alcohol dehydrogenase 1
    Names
    LOC_Os10g11810
    OSJNBb0005F01.4
    NP_001406095.1
    XP_015612799.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419166.1 → NP_001406095.1  probable cinnamyl alcohol dehydrogenase 1

      Status: VALIDATED

      Source sequence(s)
      CB000858, CB653863, CB653864, CI246332, CI581154
      UniProtKB/Swiss-Prot
      H2KX87, Q109Z0, Q8H859
      UniProtKB/TrEMBL
      A2Z5P1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      6688410..6691747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757313.3 → XP_015612799.1  probable cinnamyl alcohol dehydrogenase 1 isoform X1

      UniProtKB/Swiss-Prot
      H2KX87, Q109Z0, Q8H859
      UniProtKB/TrEMBL
      A2Z5P1
      Conserved Domains (1) summary
      cd05283
      Location:12 → 348
      CAD1; Cinnamyl alcohol dehydrogenases (CAD)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H859.1 GenPept UniProtKB/Swiss-Prot:Q8H859

    Gene LinkOut

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    Research Materials