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    LOC4332109 protein VAC14 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332109, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4332109
    Gene description
    protein VAC14 homolog
    Locus tag
    OSNPB_030223700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332109 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6516484..6524471, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6468330..6476438, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene glutamine synthetase cytosolic isozyme 1-2-like Neighboring gene uncharacterized LOC112938310 Neighboring gene uncharacterized LOC107280403 Neighboring gene probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in phosphatidylinositol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PAS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein VAC14 homolog
    Names
    Os03g0223700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      6516484..6524471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776560.2 → XP_015632046.1  protein VAC14 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8J8Y3K8, B8AJN4, B9F6A5, Q0DTU9, Q10PS3
      Conserved Domains (3) summary
      sd00044
      Location:94 → 121
      HEAT; HEAT repeat [structural motif]
      pfam11916
      Location:431 → 609
      Vac14_Fig4_bd; Vacuolar protein 14 C-terminal Fig4p binding
      pfam12755
      Location:66 → 162
      Vac14_Fab1_bd; Vacuolar 14 Fab1-binding region

    2. XM_015776559.2 → XP_015632045.1  protein VAC14 homolog isoform X1

      UniProtKB/TrEMBL
      B8AJN4
      Conserved Domains (3) summary
      sd00044
      Location:95 → 122
      HEAT; HEAT repeat [structural motif]
      pfam11916
      Location:432 → 610
      Vac14_Fig4_bd; Vacuolar protein 14 C-terminal Fig4p binding
      pfam12755
      Location:66 → 163
      Vac14_Fab1_bd; Vacuolar 14 Fab1-binding region
    Nucleotide Protein
    Heading Accession and Version

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