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    LOC4326512 probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326512, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4326512
    Gene description
    probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic
    Locus tag
    OSNPB_010939600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_04716
    Expression
    Broad expression in flower buds (RPKM 9.4), flowers (RPKM 7.3) and 6 other tissues See more
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    Genomic context

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    See LOC4326512 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41896333..41900683)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41245560..41249932)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene proline-rich receptor-like protein kinase PERK5 Neighboring gene eukaryotic peptide chain release factor subunit 1-3 Neighboring gene S-formylglutathione hydrolase Neighboring gene cytokinin dehydrogenase 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NADH oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycerol-3-phosphate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of glycerol-3-phosphate dehydrogenase (FAD) complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic
    Names
    B1150F11.17
    LOC_Os01g71280
    putative glycerol-3-phosphate dehydrogenase
    NP_001384945.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398016.1 → NP_001384945.1  probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic

      Status: VALIDATED

      Source sequence(s)
      AK068569, AU222785
      UniProtKB/Swiss-Prot
      A0A0P0VCQ6, Q0JG64, Q8S0G4
      UniProtKB/TrEMBL
      A2WYW9
      Conserved Domains (1) summary
      COG0240
      Location:37 → 427
      GpsA; Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41896333..41900683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S0G4.1 GenPept UniProtKB/Swiss-Prot:Q8S0G4

    Gene LinkOut

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