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    LOC4340258 ribonucleoside-diphosphate reductase large subunit [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340258, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340258
    Gene description
    ribonucleoside-diphosphate reductase large subunit
    Locus tag
    OSNPB_060168600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RnrL1
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    Genomic context

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    See LOC4340258 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3612440..3617346, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3449699..3454774, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase I subunit rpa43 Neighboring gene syntaxin-132 Neighboring gene 36.4 kDa proline-rich protein Neighboring gene serine/threonine-protein kinase PBL34

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development. Yoo SC, et al. Plant Physiol, 2009 May. PMID 19297585, Free PMC Article
    2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in deoxyribonucleotide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ribonucleoside-diphosphate reductase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribonucleoside-diphosphate reductase large subunit
    Names
    OSJNBa0033B09.19
    Os06g0168600
    P0680A03.40
    putative ribonucleotide reductase
    ribonucleotide diphosphate reductase large subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      3612440..3617346 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785565.3 → XP_015641051.1  ribonucleoside-diphosphate reductase large subunit

      UniProtKB/TrEMBL
      A0A0P0WTF8, B2M117, Q0DE83, Q5VRF5
      Conserved Domains (1) summary
      PLN02437
      Location:1 → 814
      PLN02437; ribonucleoside--diphosphate reductase large subunit
    Nucleotide Protein
    Heading Accession and Version

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