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    LOC4340510 F-box protein FBW2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340510, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4340510
    Gene description
    F-box protein FBW2
    Locus tag
    OSNPB_060219700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 22.4), roots after flowering (RPKM 20.4) and 6 other tissues See more
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    Genomic context

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    See LOC4340510 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (6327973..6330778, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (6160767..6163681, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene 26.2 kDa heat shock protein, mitochondrial Neighboring gene polyadenylate-binding protein 2 Neighboring gene uncharacterized LOC4340511 Neighboring gene protein EXORDIUM-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein FBW2
    Names
    F-box domain-containing protein
    F-box protein-like
    Os06g0219700
    P0436F11.26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      6327973..6330778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785597.2 → XP_015641083.1  F-box protein FBW2

      UniProtKB/TrEMBL
      A0A0P0WUN2, A2YAR9, Q0DDJ5, Q67X80
      Conserved Domains (3) summary
      cd09293
      Location:103 → 242
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:51 → 83
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:10 → 55
      F-box-like
    Nucleotide Protein
    Heading Accession and Version

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