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    LOC4325456 protein NRT1/ PTR FAMILY 8.2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325456, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325456
    Gene description
    protein NRT1/ PTR FAMILY 8.2
    Locus tag
    OSNPB_010142600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 44.3), leaves before flowering (RPKM 38.2) and 6 other tissues See more
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    Genomic context

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    See LOC4325456 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2300062..2306048)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2292093..2298290)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transcription factor DIVARICATA Neighboring gene uncharacterized LOC136354987 Neighboring gene uncharacterized LOC112937828

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in oligopeptide transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NRT1/ PTR FAMILY 8.2; uncharacterized protein LOC4325456
    Names
    Os01g0142600
    Os01g0142800
    P0019D06.17-1
    P0024G09.5-1
    putative peptide transport protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2300062..2306048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762794.3 → XP_015618280.1  uncharacterized protein LOC4325456 isoform X1

      UniProtKB/TrEMBL
      A0A0P0UYD6
      Conserved Domains (1) summary
      cl21472
      Location:24 → 96
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

    2. XM_015762812.3 → XP_015618298.1  protein NRT1/ PTR FAMILY 8.2 isoform X2

      UniProtKB/TrEMBL
      A2WKJ2, A2ZP47, B7EH87, Q7F492, Q9FU86
      Conserved Domains (1) summary
      cl28910
      Location:30 → 562
      MFS; Major Facilitator Superfamily

    3. XM_015762786.3 → XP_015618272.1  uncharacterized protein LOC4325456 isoform X1

      UniProtKB/TrEMBL
      A0A0P0UYD6
      Conserved Domains (1) summary
      cl21472
      Location:24 → 96
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

    4. XM_015762803.3 → XP_015618289.1  protein NRT1/ PTR FAMILY 8.2 isoform X2

      UniProtKB/TrEMBL
      A2WKJ2, A2ZP47, B7EH87, Q7F492, Q9FU86
      Conserved Domains (1) summary
      cl28910
      Location:30 → 562
      MFS; Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version

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