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    LOC4340004 barley B recombinant-like protein D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340004, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4340004
    Gene description
    barley B recombinant-like protein D
    Locus tag
    OSNPB_060130600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0493C11.7
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    Genomic context

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    See LOC4340004 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1793552..1797910, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1636422..1640886, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate synthase 6-like Neighboring gene peptidyl-prolyl cis-trans isomerase CYP18-1 Neighboring gene histone H1 Neighboring gene histone H3.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. Santi L, et al. Plant J, 2003 Jun. PMID 12795701
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to ethylene IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GAGA binding protein
    Names
    BBR-like protein D
    GAGA-binding transcriptional activator BBR-D
    LOC_Os06g04010
    putative basic pentacysteine 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421021.1 → NP_001407950.1  GAGA binding protein

      Status: VALIDATED

      Source sequence(s)
      AK070616, CI223897, CI309833, CI740127
      UniProtKB/Swiss-Prot
      A0A0P0WSI7, Q5VSA8
      UniProtKB/TrEMBL
      A3B819

    2. NM_001421022.1 → NP_001407951.1  GAGA binding protein

      Status: VALIDATED

      Source sequence(s)
      AK070616, AY957505, CI223897, CI740127
      UniProtKB/Swiss-Prot
      A0A0P0WSI7, Q5VSA8
      UniProtKB/TrEMBL
      A3B819

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1793552..1797910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VSA8.1 GenPept UniProtKB/Swiss-Prot:Q5VSA8

    Gene LinkOut

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