U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC4334542 peptidyl-prolyl cis-trans isomerase CYP22 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334542, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4334542
    Gene description
    peptidyl-prolyl cis-trans isomerase CYP22
    Locus tag
    OSNPB_030811600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 30.4), roots after flowering (RPKM 29.2) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC4334542 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33995691..33998700, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene DNA ligase 1 Neighboring gene protein MIZU-KUSSEI 1 Neighboring gene splicing factor 3B subunit 6-like protein Neighboring gene uncharacterized LOC4334544

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    peptidyl-prolyl cis-trans isomerase CYP22
    Names
    Os03g0811600

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      33995691..33998700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776434.2XP_015631920.1  peptidyl-prolyl cis-trans isomerase CYP22

      UniProtKB/TrEMBL
      B8AM85, B9F6X2, Q0DMF1, Q1KL26, Q7XZG9
      Conserved Domains (1) summary
      PLN03149
      Location:25204
      PLN03149; peptidyl-prolyl isomerase H (cyclophilin H); Provisional