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    LOC4325117 protein CASPARIAN STRIP INTEGRITY FACTOR 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325117, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4325117
    Gene description
    protein CASPARIAN STRIP INTEGRITY FACTOR 1
    Locus tag
    OSNPB_010260800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0469E09.1
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    Genomic context

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    See LOC4325117 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8779977..8785701)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8767812..8773516)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein RGA1 Neighboring gene transcription factor Pur-alpha 1 Neighboring gene uncharacterized LOC112938363 Neighboring gene uncharacterized LOC9270389

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein CASPARIAN STRIP INTEGRITY FACTOR 1
    Names
    Os01g0260800
    P0699D11.20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      8779977..8785701
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794274.3 → XP_015649760.1  protein CASPARIAN STRIP INTEGRITY FACTOR 1

      UniProtKB/TrEMBL
      A0A0P0V173, A0A8J8Y1Z4, A2WN37, Q7F8D5, Q9LE46
    Nucleotide Protein
    Heading Accession and Version

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