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    LOC9270659 tyrosine-protein phosphatase DSP3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270659, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9270659
    Gene description
    tyrosine-protein phosphatase DSP3
    Locus tag
    OSNPB_120420300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 29.8), flowers (RPKM 12.6) and 3 other tissues See more
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    Genomic context

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    See LOC9270659 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (13110872..13114352)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene beta-glucosidase 38-like Neighboring gene chloroplast stem-loop binding protein of 41 kDa b, chloroplastic Neighboring gene photosystem I reaction center subunit XI, chloroplastic Neighboring gene uncharacterized LOC107279742

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine-protein phosphatase DSP3
    Names
    Os12g0420300
    probable tyrosine-protein phosphatase At1g05000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13110872..13114352
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764957.2 → XP_015620443.1  tyrosine-protein phosphatase DSP3

      UniProtKB/TrEMBL
      A2ZJX6, Q2QSR6
      Conserved Domains (1) summary
      cd14528
      Location:20 → 166
      PFA-DSP_Siw14; atypical dual specificity phosphatases similar to yeast Siw14
    Nucleotide Protein
    Heading Accession and Version

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