DCD1 putative D-cysteine desulfhydrase 1, mitochondrial [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: DCD1
Gene description: putative D-cysteine desulfhydrase 1, mitochondrial
Locus tag: OSNPB_020773300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsDCD1; D-CDes1; OsD-CDes1; OsJ_08555; OJ1611_C08.26
Expression: Ubiquitous expression in roots after flowering (RPKM 57.8), leaves before flowering (RPKM 56.8) and 5 other tissues See more
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Genomic context

Location:: chromosome: 2

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (32644973..32648499, complement)

Chromosome 2 - NC_029257.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables D-cysteine desulfhydrase activity	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: D-cysteine desulfhydrase 1, mitochondrial; putative D-cysteine desulfhydrase 1, mitochondrial

Names: LOC_Os02g53330; putative 1-aminocyclopropane-1-carboxylate deaminase

XP_015626189.1

EC 4.4.1.15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001416929.1 → NP_001403858.1 D-cysteine desulfhydrase 1, mitochondrial

Status: VALIDATED

Source sequence(s)

CB639051, CB646526, CI318060, CI656538

UniProtKB/Swiss-Prot

Q6ZHE5

UniProtKB/TrEMBL

A0A0P0VQ66

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029257.1 Reference IRGSP-1.0 Primary Assembly

Range

32644973..32648499 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015770703.1 → XP_015626189.1 putative D-cysteine desulfhydrase 1, mitochondrial

UniProtKB/Swiss-Prot

Q6ZHE5

Conserved Domains (1) summary

cl00342
Location:80 → 400

Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...