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    LOC4341977 L-arabinokinase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341977, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341977
    Gene description
    L-arabinokinase
    Locus tag
    OSNPB_060702500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 54.4), roots after flowering (RPKM 51.3) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30493082..30501036)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29626030..29634251)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341976 Neighboring gene pollen receptor-like kinase 3 Neighboring gene auxin response factor 19-like Neighboring gene AIG2-like protein D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-arabinokinase
    Names
    GHMP kinase-like
    Os06g0702500
    P0596H10.38-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      30493082..30501036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788437.3 → XP_015643923.1  L-arabinokinase isoform X1

      UniProtKB/TrEMBL
      B9FQR8
      Conserved Domains (6) summary
      COG0153
      Location:485 → 894
      GalK; Galactokinase [Carbohydrate transport and metabolism]
      pfam00288
      Location:640 → 708
      GHMP_kinases_N; GHMP kinases N terminal domain
      pfam10509
      Location:502 → 543
      GalKase_gal_bdg; Galactokinase galactose-binding signature
      pfam13528
      Location:22 → 317
      Glyco_trans_1_3; Glycosyl transferase family 1
      cl10013
      Location:30 → 150
      Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
      cl21453
      Location:735 → 795
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015788438.3 → XP_015643924.1  L-arabinokinase isoform X2

      UniProtKB/TrEMBL
      B8B256, B9FQR8, Q0D9R8, Q5Z8W3
      Conserved Domains (2) summary
      COG0153
      Location:479 → 888
      GalK; Galactokinase [Carbohydrate transport and metabolism]
      cl10013
      Location:18 → 238
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    Nucleotide Protein
    Heading Accession and Version

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