U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC4340943 cellulose synthase-like protein D5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340943, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4340943
    Gene description
    cellulose synthase-like protein D5
    Locus tag
    OSNPB_060336500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CSLD5; OsCslD5; OsJ_020361
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4340943 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (13599444..13603075)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (13414647..13418280)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene uncharacterized LOC107278311 Neighboring gene probable aquaporin TIP2-2 Neighboring gene uncharacterized LOC107281366 Neighboring gene zinc-finger homeodomain protein 9-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cellulose synthase-like protein D5
    Names
    LOC_Os06g22980
    P0427E01.10
    putative cellulose synthase-like protein D4
    NP_001410913.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423984.1 → NP_001410913.1  cellulose synthase-like protein D5

      Status: VALIDATED

      Source sequence(s)
      AK072260, AP014962, CI347401
      UniProtKB/Swiss-Prot
      A0A0P0WW80, Q5Z6E5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      13599444..13603075
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5Z6E5.1 GenPept UniProtKB/Swiss-Prot:Q5Z6E5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials