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    LOC4332400 laccase-10-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332400, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4332400
    Gene description
    laccase-10-like
    Locus tag
    OSNPB_030273200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LAC10; OsJ_10313; OsJ_009911
    Expression
    Biased expression in flowers (RPKM 90.4), flower buds (RPKM 30.7) and 2 other tissues See more
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    Genomic context

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    See LOC4332400 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9217915..9220682, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9167699..9170345, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene small polypeptide DEVIL 11 Neighboring gene uncharacterized LOC136355553 Neighboring gene uncharacterized LOC136355577 Neighboring gene uncharacterized protein C24B11.05

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydroquinone:oxygen oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lignin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    laccase-10
    Names
    Benzenediol:oxygen oxidoreductase 10
    Diphenol oxidase 10
    LOC_Os03g16610
    Urishiol oxidase 10
    NP_001404427.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417498.1 → NP_001404427.1  laccase-10 precursor

      Status: VALIDATED

      Source sequence(s)
      AK060579, CI104319, CI146188, CI585289, CI596340
      UniProtKB/Swiss-Prot
      A3AGI9, B7E555, Q10ND7
      UniProtKB/TrEMBL
      B8AKR2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9217915..9220682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10ND7.1 GenPept UniProtKB/Swiss-Prot:Q10ND7

    Gene LinkOut

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