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    LOC4340741 H/ACA ribonucleoprotein complex subunit 2-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340741, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4340741
    Gene description
    H/ACA ribonucleoprotein complex subunit 2-like protein
    Locus tag
    OSNPB_060274200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0038C05.6
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    Genomic context

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    See LOC4340741 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (9459122..9461217)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (9283136..9285248)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene heat shock factor-binding protein Neighboring gene uncharacterized LOC4340740 Neighboring gene LRR receptor kinase SERL2-like Neighboring gene LRR receptor kinase SERL2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables box H/ACA snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in snRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    H/ACA ribonucleoprotein complex subunit 2-like protein
    Names
    Os06g0274200
    P0676F10.17
    putative nucleolar protein family A member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      9459122..9461217
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785990.3 → XP_015641476.1  H/ACA ribonucleoprotein complex subunit 2-like protein

      UniProtKB/TrEMBL
      A0A5S6R7P8, B8AI40, B8B0J9, B9FSQ2, Q8H2H9, Q9FP19
      Conserved Domains (1) summary
      pfam01248
      Location:34 → 116
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
    Nucleotide Protein
    Heading Accession and Version

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