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    LOC4328946 disease resistance protein RGA2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328946, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328946
    Gene description
    disease resistance protein RGA2
    Locus tag
    OSNPB_020262800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    rNBS41
    Expression
    Broad expression in leaves before flowering (RPKM 1.7), roots before flowering (RPKM 1.6) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9285218..9289831)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9257986..9262918)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355106 Neighboring gene putative disease resistance protein RGA3 Neighboring gene uncharacterized LOC136355061 Neighboring gene putative disease resistance protein RGA1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA2
    Names
    NBS-LRR protein
    OSJNBa0011J03.3
    OSJNBb0049K19.30
    Os02g0262800
    putative bacterial blight-resistance protein Xa1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      9285218..9289831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767150.3 → XP_015622636.1  disease resistance protein RGA2

      UniProtKB/TrEMBL
      A3A5A7, Q0E282, Q6EPC5
      Conserved Domains (5) summary
      PLN03210
      Location:1134 → 1355
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:1173 → 1195
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1038 → 1062
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00931
      Location:226 → 473
      NB-ARC; NB-ARC domain
      pfam18052
      Location:7 → 94
      Rx_N; Rx N-terminal domain

    2. XM_015767149.3 → XP_015622635.1  disease resistance protein RGA2

      UniProtKB/TrEMBL
      A3A5A7, Q0E282, Q6EPC5
      Conserved Domains (5) summary
      PLN03210
      Location:1134 → 1355
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:1173 → 1195
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1038 → 1062
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00931
      Location:226 → 473
      NB-ARC; NB-ARC domain
      pfam18052
      Location:7 → 94
      Rx_N; Rx N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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