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    LOC4324331 AP-4 complex subunit epsilon [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324331, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324331
    Gene description
    AP-4 complex subunit epsilon
    Locus tag
    OSNPB_010916200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0413C03.5
    Expression
    Ubiquitous expression in roots after flowering (RPKM 25.0), leaves after flowering (RPKM 23.6) and 6 other tissues See more
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    Genomic context

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    See LOC4324331 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40565926..40572810, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39931218..39938181, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein 2-like Neighboring gene glycine-rich cell wall structural protein 1.0 Neighboring gene uncharacterized LOC4324332 Neighboring gene selenium-binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cargo adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-4 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-4 complex subunit epsilon
    Names
    Os01g0916200
    P0004D12.31
    putative adapter-related protein complex 4 epsilon 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40565926..40572810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761161.3 → XP_015616647.1  AP-4 complex subunit epsilon

      UniProtKB/TrEMBL
      A2WYB1, Q7F2Y2, Q8RZX0
      Conserved Domains (3) summary
      pfam01602
      Location:41 → 597
      Adaptin_N; Adaptin N terminal region
      pfam08690
      Location:783 → 888
      GET2; GET complex subunit GET2
      sd00044
      Location:123 → 148
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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