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    LOC4338405 plasma membrane ATPase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338405, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338405
    Gene description
    plasma membrane ATPase-like
    Locus tag
    OSNPB_050319800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    a4
    Expression
    Restricted expression toward flowers (RPKM 42.1) See more
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    Genomic context

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    See LOC4338405 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (14928589..14933009, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (14848455..14852872, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate synthase 4-like Neighboring gene probable receptor-like protein kinase At1g80640 Neighboring gene endo-1,4-beta-xylanase 3 Neighboring gene uncharacterized LOC136356645

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type proton-exporting transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton export across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of intracellular pH IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATPase 2, plasma membrane-type; plasma membrane ATPase-like
    Names
    Os05g0319800
    plasma membrane H+ ATPase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      14928589..14933009 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782646.3 → XP_015638132.1  plasma membrane ATPase-like isoform X2

      UniProtKB/TrEMBL
      Q8L6I0
      Conserved Domains (1) summary
      TIGR01647
      Location:33 → 803
      ATPase-IIIA_H; plasma-membrane proton-efflux P-type ATPase

    2. XM_015782645.3 → XP_015638131.1  ATPase 2, plasma membrane-type isoform X1

      UniProtKB/TrEMBL
      B8AWL5, B9FNV9
      Conserved Domains (4) summary
      smart00831
      Location:12 → 75
      Cation_ATPase_N; Cation transporter/ATPase, N-terminus
      COG4087
      Location:543 → 630
      COG4087; Soluble P-type ATPase [General function prediction only]
      TIGR01647
      Location:33 → 826
      ATPase-IIIA_H; plasma-membrane proton-efflux P-type ATPase
      pfam00122
      Location:98 → 319
      E1-E2_ATPase; E1-E2 ATPase
    Nucleotide Protein
    Heading Accession and Version

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