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    LOC4342265 putative F-box/FBD/LRR-repeat protein At4g03220 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342265, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4342265
    Gene description
    putative F-box/FBD/LRR-repeat protein At4g03220
    Locus tag
    OSNPB_070118800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1119_A04.137-1; OJ1119_A04.137-2
    Expression
    Ubiquitous expression in flower buds (RPKM 4.6), flowers (RPKM 3.4) and 6 other tissues See more
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    Genomic context

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    See LOC4342265 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1017270..1020426)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1006761..1010137)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At5g01610 Neighboring gene uncharacterized LOC4342264 Neighboring gene putative F-box/FBD/LRR-repeat protein At4g03220 Neighboring gene mitogen-activated protein kinase kinase kinase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative F-box/FBD/LRR-repeat protein At4g03220
    Names
    F-box and FBD domain-containing protein
    Os07g0118800
    P0022B05.102-1
    P0022B05.102-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1017270..1020426
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789616.3 → XP_015645102.1  putative F-box/FBD/LRR-repeat protein At4g03220

      UniProtKB/TrEMBL
      A2YHM4, A3BG24
    Nucleotide Protein
    Heading Accession and Version

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