LOC4330670 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4330670
Gene description: DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
Locus tag: OSNPB_020739000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Biased expression in leaves before flowering (RPKM 53.4), roots after flowering (RPKM 28.9) and 3 other tissues See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 2

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	2	NC_089036.1 (31367921..31377203)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (30872764..30882074)

Chromosome 2 - NC_089036.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA helicase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of Ski complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: DExH-box ATP-dependent RNA helicase DExH15 chloroplastic

Names: Os02g0739000; P0684F11.16; putative helicase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001416878.1 → NP_001403807.1 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic precursor

Status: VALIDATED

Source sequence(s)

AK099845

UniProtKB/TrEMBL

A0A0P0VP79, B9F2W9, Q6Z5P0