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    LOC4333825 uncharacterized LOC4333825 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333825, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333825
    Gene description
    uncharacterized LOC4333825
    Locus tag
    OSNPB_030701000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333825 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29002497..29010890)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28128716..28137146)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable linoleate 9S-lipoxygenase 4 Neighboring gene protein ETHYLENE-INSENSITIVE 2-like Neighboring gene uncharacterized LOC4333826 Neighboring gene uncharacterized protein C24B11.05

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear import signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4333825
    Names
    Os03g0701000
    importin-5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      29002497..29010890
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776913.3 → XP_015632399.1  uncharacterized protein LOC4333825

      UniProtKB/TrEMBL
      B8AQ13, Q10EF8
      Conserved Domains (5) summary
      COG5215
      Location:94 → 640
      KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
      sd00044
      Location:376 → 404
      HEAT; HEAT repeat [structural motif]
      pfam13513
      Location:897 → 946
      HEAT_EZ; HEAT-like repeat
      pfam18808
      Location:284 → 374
      Importin_rep_4; Importin repeat
      pfam18829
      Location:782 → 889
      Importin_rep_6; Importin repeat 6

    RNA

    1. XR_010739859.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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