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    LOC112936149 U-box domain-containing protein 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 112936149, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC112936149
    Gene description
    U-box domain-containing protein 6
    Locus tag
    OSNPB_040489800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC112936149 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24968467..24976211)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24471671..24479439)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH80 Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene protoporphyrinogen oxidase, mitochondrial Neighboring gene uncharacterized LOC9272103 Neighboring gene U6atac minor spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 6
    Names
    putative armadillo/beta-catenin repeat family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      24968467..24976211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024759.2 → XP_025880544.1  U-box domain-containing protein 6

      UniProtKB/TrEMBL
      A0A0P0WBP6, A3AV39, B8AVU7, Q7X741
    Nucleotide Protein
    Heading Accession and Version

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