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    LOC4346199 ankyrin repeat-containing protein At5g02620 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346199, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346199
    Gene description
    ankyrin repeat-containing protein At5g02620
    Locus tag
    OSNPB_080542700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1521_G02.18
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    Genomic context

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    See LOC4346199 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27303103..27307079)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27156474..27160499)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein EARLY FLOWERING 5 Neighboring gene uncharacterized LOC4346198 Neighboring gene la-related protein 6B Neighboring gene uncharacterized LOC107275936

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat-containing protein At5g02620
    Names
    Os08g0542700
    ankyrin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27303103..27307079
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795459.3 → XP_015650945.1  ankyrin repeat-containing protein At5g02620

      UniProtKB/TrEMBL
      A0A0N7KQ84, A0A8J8XDT9, A3BVD3, Q0J407, Q6ZJG2
      Conserved Domains (4) summary
      COG0666
      Location:96 → 311
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:119 → 150
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:124 → 217
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:369 → 484
      PGG; Domain of unknown function
    Nucleotide Protein
    Heading Accession and Version

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