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    LOC4336531 uncharacterized LOC4336531 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336531, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4336531
    Gene description
    uncharacterized LOC4336531
    Locus tag
    OSNPB_040539100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 25.2), flowers (RPKM 23.6) and 6 other tissues See more
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    Genomic context

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    See LOC4336531 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27482894..27486428, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (26978635..26982221, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIN-7F Neighboring gene uncharacterized LOC4336529 Neighboring gene NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like Neighboring gene cytochrome P450 84A1-like Neighboring gene GATA transcription factor 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized LOC4336531
    Names
    Os04g0539100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419722.1 → NP_001406651.1  uncharacterized LOC4336531

      Status: VALIDATED

      Source sequence(s)
      AK069820, AU031947, CI343957, D24919
      UniProtKB/TrEMBL
      A0A0P0WD09, A2XVZ2, A3AVZ3, Q7XR97

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27482894..27486428 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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