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    LOC4340930 uncharacterized LOC4340930 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340930, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340930
    Gene description
    uncharacterized LOC4340930
    Locus tag
    OSNPB_060332900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 15.7), roots after flowering (RPKM 15.6) and 6 other tissues See more
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    Genomic context

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    See LOC4340930 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (13385665..13390503, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (13200909..13205820, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein tesmin/TSO1-like CXC 7 Neighboring gene protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic Neighboring gene uncharacterized LOC136356944 Neighboring gene uncharacterized LOC136356993 Neighboring gene uncharacterized LOC9268525

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4340930
    Names
    Os06g0332900
    P0531C01.28
    RNA-binding protein-like
    serine/arginine repetitive matrix protein 1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      13385665..13390503 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788294.3 → XP_015643780.1  uncharacterized protein LOC4340930

      UniProtKB/TrEMBL
      B8B1C5
      Conserved Domains (2) summary
      smart00547
      Location:258 → 282
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:260 → 281
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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