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    LOC4351637 probable catabolite repression protein creC [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351637, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4351637
    Gene description
    probable catabolite repression protein creC
    Locus tag
    OSNPB_120172500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 39.7), leaves after flowering (RPKM 36.6) and 6 other tissues See more
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    Genomic context

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    See LOC4351637 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (3700814..3707032, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (3672810..3679301, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279596 Neighboring gene uncharacterized LOC4351636 Neighboring gene gibberellin 3-beta-dioxygenase 2-like Neighboring gene transcription factor PCF3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable catabolite repression protein creC
    Names
    Os12g0172500
    dystrophia myotonica WD repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      3700814..3707032 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306295.1 → XP_066162392.1  probable catabolite repression protein creC isoform X2

      UniProtKB/TrEMBL
      A0A5S6RBF6, A0A8J8XWK0, B8BNE7, B9GC38, Q0IPR5, Q2QX21

    2. XM_015764878.3 → XP_015620364.1  probable catabolite repression protein creC isoform X2

      UniProtKB/TrEMBL
      A0A5S6RBF6, A0A8J8XWK0, B8BNE7, B9GC38, Q0IPR5, Q2QX21
      Conserved Domains (3) summary
      COG2319
      Location:157 → 531
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:237 → 272
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:304 → 514
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_015764877.3 → XP_015620363.1  probable catabolite repression protein creC isoform X1

      Conserved Domains (3) summary
      COG2319
      Location:160 → 534
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:240 → 275
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:307 → 517
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_015764876.3 → XP_015620362.1  probable catabolite repression protein creC isoform X1

      Conserved Domains (3) summary
      COG2319
      Location:160 → 534
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:240 → 275
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:307 → 517
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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