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    LOC4338664 N-alpha-acetyltransferase 40 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338664, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4338664
    Gene description
    N-alpha-acetyltransferase 40
    Locus tag
    OSNPB_050387800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338664 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18865010..18868639, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18763558..18767179, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338661 Neighboring gene serine/threonine-protein kinase-like protein At3g51990 Neighboring gene protein N-terminal glutamine amidohydrolase-like Neighboring gene putative NAD kinase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H2A acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H4 acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptide-serine-alpha-N-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N-alpha-acetyltransferase 40
    Names
    Os05g0387800
    NP_001410848.1
    XP_015637773.1
    XP_066166339.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423919.1 → NP_001410848.1  N-alpha-acetyltransferase 40

      Status: VALIDATED

      Source sequence(s)
      AK101626, AP014961
      UniProtKB/TrEMBL
      A0A0P0WLT8, Q60E62

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      18865010..18868639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310242.1 → XP_066166339.1  N-alpha-acetyltransferase 40 isoform X1

    2. XM_015782287.3 → XP_015637773.1  N-alpha-acetyltransferase 40 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WLT8, B9FPD7, Q60E62
      Conserved Domains (1) summary
      pfam00583
      Location:144 → 221
      Acetyltransf_1; Acetyltransferase (GNAT) family
    Nucleotide Protein
    Heading Accession and Version

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