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    LOC4351716 uncharacterized LOC4351716 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351716, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351716
    Gene description
    uncharacterized LOC4351716
    Locus tag
    OSNPB_120194800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351716 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (4894966..4906505)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (4863260..4874875)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At4g06598 Neighboring gene uncharacterized LOC4351715 Neighboring gene amino acid permease 6 Neighboring gene uncharacterized LOC107279633

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4351716
    Names
    Os12g0194800
    tRNA pseudouridine synthase A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      4894966..4906505
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764731.2 → XP_015620217.1  uncharacterized protein LOC4351716 isoform X1

      UniProtKB/TrEMBL
      B8BNJ9, B9GC99, Q2QWH9
      Conserved Domains (1) summary
      cd02570
      Location:77 → 387
      PseudoU_synth_EcTruA; Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA

    2. XM_026021844.2 → XP_025877629.1  uncharacterized protein LOC4351716 isoform X2

      UniProtKB/TrEMBL
      B8BNJ9
      Conserved Domains (1) summary
      cd02570
      Location:77 → 386
      PseudoU_synth_EcTruA; Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA
    Nucleotide Protein
    Heading Accession and Version

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