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    LOC4339234 probable indole-3-acetic acid-amido synthetase GH3.4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339234, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4339234
    Gene description
    probable indole-3-acetic acid-amido synthetase GH3.4
    Locus tag
    OSNPB_050500900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GH3.4; OsGH3-4; OsJ_19094
    Expression
    Biased expression in milk grains (RPKM 12.0), flowers (RPKM 9.7) and 1 other tissue See more
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    Genomic context

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    See LOC4339234 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (24758558..24760969, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24643554..24646086, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene scarecrow-like protein 32 Neighboring gene uncharacterized LOC4339233 Neighboring gene uncharacterized LOC112938991 Neighboring gene transcription factor bHLH68

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid-amino acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable indole-3-acetic acid-amido synthetase GH3.4
    Names
    Auxin-responsive GH3-like protein 4
    LOC_Os05g42150
    OSJNBa0017K09.2
    NP_001407619.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420690.1 → NP_001407619.1  probable indole-3-acetic acid-amido synthetase GH3.4

      Status: VALIDATED

      Source sequence(s)
      AK101932, AP014961, CI069554, CI147030, CI197924, CI303000
      UniProtKB/Swiss-Prot
      Q0DGZ2, Q60EJ6
      UniProtKB/TrEMBL
      A2Y678

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      24758558..24760969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q60EJ6.1 GenPept UniProtKB/Swiss-Prot:Q60EJ6

    Gene LinkOut

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