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    LOC4331647 heavy metal-associated isoprenylated plant protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331647, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331647
    Gene description
    heavy metal-associated isoprenylated plant protein 3
    Locus tag
    OSNPB_030152000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 213.8) and leaves before flowering (RPKM 11.5) See more
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    Genomic context

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    See LOC4331647 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2875410..2877093, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2866377..2868237, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene cell division cycle protein 48 homolog Neighboring gene ras-related protein RABF1 Neighboring gene transcription factor-like protein DPB Neighboring gene peroxidase 44

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heavy metal-associated isoprenylated plant protein 3
    Names
    Os03g0152000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2875410..2877093 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773366.2 → XP_015628852.1  heavy metal-associated isoprenylated plant protein 3

      UniProtKB/TrEMBL
      A3AE75, Q0DV35, Q10RN8
      Conserved Domains (1) summary
      pfam00403
      Location:23 → 71
      HMA; Heavy-metal-associated domain
    Nucleotide Protein
    Heading Accession and Version

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