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    LOC4327446 uncharacterized serine-rich protein C215.13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327446, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327446
    Gene description
    uncharacterized serine-rich protein C215.13
    Locus tag
    OSNPB_010819000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1529_G03.4-1
    Expression
    Ubiquitous expression in roots after flowering (RPKM 33.6), leaves after flowering (RPKM 25.1) and 6 other tissues See more
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    Genomic context

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    See LOC4327446 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35495532..35499805)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34888300..34892763)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g06840 Neighboring gene uncharacterized LOC4327444 Neighboring gene uncharacterized LOC136356048 Neighboring gene probable inactive receptor kinase At5g58300 Neighboring gene synaptotagmin-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cortical microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cortical microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized serine-rich protein C215.13
    Names
    Os01g0819000
    P0454H12.39-1
    gastric mucin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      35495532..35499805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766721.3 → XP_015622207.1  uncharacterized serine-rich protein C215.13

      UniProtKB/TrEMBL
      B8ABB2, B9ETW8, Q0JI78, Q5QLZ3, Q5QML8
      Conserved Domains (2) summary
      PHA03247
      Location:108 → 396
      PHA03247; large tegument protein UL36; Provisional
      pfam15402
      Location:48 → 196
      Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

    2. XM_015766719.3 → XP_015622205.1  uncharacterized serine-rich protein C215.13

      UniProtKB/TrEMBL
      B8ABB2, B9ETW8, Q0JI78, Q5QLZ3, Q5QML8
      Conserved Domains (2) summary
      PHA03247
      Location:108 → 396
      PHA03247; large tegument protein UL36; Provisional
      pfam15402
      Location:48 → 196
      Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7
    Nucleotide Protein
    Heading Accession and Version

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