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    LOC4338582 FT-interacting protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338582, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4338582
    Gene description
    FT-interacting protein 1
    Locus tag
    OSNPB_050370600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FTIP7; OsFTIP7; OsJ_18293; OJ1118_F06.6
    Expression
    Biased expression in milk grains (RPKM 27.2), flowers (RPKM 23.9) and 3 other tissues See more
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    Genomic context

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    See LOC4338582 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (17912476..17916868)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17812063..17816246)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268611 Neighboring gene protein SRC2 Neighboring gene probable esterase PIR7A Neighboring gene probable esterase PIR7A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsFTIP7 determines auxin-mediated anther dehiscence in rice. Song S, et al. Nat Plants, 2018 Jul. PMID 29915329
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. determines auxin-mediated anther dehiscence
      Title: OsFTIP7 determines auxin-mediated anther dehiscence in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    fT-interacting protein 7
    Names
    FT-interacting protein 7
    LOC_Os05g30750

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420454.1 → NP_001407383.1  fT-interacting protein 7

      Status: VALIDATED

      Source sequence(s)
      AK058522, AK102476, CI121295, CI168558, CI178925, CI628355, CI748013
      UniProtKB/Swiss-Prot
      Q60EW9
      UniProtKB/TrEMBL
      A2Y3X0

    2. NM_001420455.1 → NP_001407384.1  fT-interacting protein 7

      Status: VALIDATED

      Source sequence(s)
      AK058522, AK102476, CI121295, CI168558, CI178925, CI607421, CI748013
      UniProtKB/Swiss-Prot
      Q60EW9
      UniProtKB/TrEMBL
      A2Y3X0

    3. NM_001420456.1 → NP_001407385.1  fT-interacting protein 7

      Status: VALIDATED

      Source sequence(s)
      AK058522, AK102476, CI121295, CI168558, CI178925, CI744050, CI748013
      UniProtKB/Swiss-Prot
      Q60EW9
      UniProtKB/TrEMBL
      A2Y3X0

    4. NM_001420457.1 → NP_001407386.1  fT-interacting protein 7

      Status: VALIDATED

      Source sequence(s)
      AK058522, AK102476, CI121295, CI168558, CI178925, CI645979, CI748013, CI753477
      UniProtKB/Swiss-Prot
      Q60EW9
      UniProtKB/TrEMBL
      A2Y3X0

    5. NM_001420458.1 → NP_001407387.1  fT-interacting protein 7

      Status: VALIDATED

      Source sequence(s)
      AK058522, AK102476, CI121295, CI168558, CI178925, CI742071, CI748013
      UniProtKB/Swiss-Prot
      Q60EW9
      UniProtKB/TrEMBL
      A2Y3X0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      17912476..17916868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310241.1 → XP_066166338.1  fT-interacting protein 7 isoform X1

    2. XM_015784854.3 → XP_015640340.1  fT-interacting protein 7 isoform X1

      UniProtKB/Swiss-Prot
      Q60EW9
      UniProtKB/TrEMBL
      A2Y3X0
      Conserved Domains (4) summary
      cd04019
      Location:202 → 352
      C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08378
      Location:41 → 165
      C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08379
      Location:364 → 491
      C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      pfam08372
      Location:619 → 774
      PRT_C; Plant phosphoribosyltransferase C-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q60EW9.1 GenPept UniProtKB/Swiss-Prot:Q60EW9

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