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    TGAL4 transcription factor TGAL4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349800, updated on 10-Oct-2024

    Summary

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    Gene symbol
    TGAL4
    Gene description
    transcription factor TGAL4-like
    Locus tag
    OSNPB_110152700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsbZIP79
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    Genomic context

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    See TGAL4 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (2507778..2516919, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2462166..2471359, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270175 Neighboring gene CEN-like protein 2 Neighboring gene uncharacterized LOC9266288 Neighboring gene uncharacterized LOC9266116 Neighboring gene alpha carbonic anhydrase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. Miyamoto K, et al. J Plant Physiol, 2015 Jan 15. PMID 25462074
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsbZIP79 functions as a negative regulator of phytoalexin production triggered by a chitin oligosaccharide elicitor in rice cells.
      Title: Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGAL4
    Names
    LOC_Os11g05480
    Os11g0152700
    bZIP transcription factor 79
    transcription factor HBP-1b(c38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404446.1 → NP_001391375.1  transcription factor TGAL4

      Status: VALIDATED

      Source sequence(s)
      AK069411, BT129813
      UniProtKB/Swiss-Prot
      Q53Q70

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      2507778..2516919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762315.3 → XP_015617801.1  transcription factor TGAL4 isoform X2

      UniProtKB/TrEMBL
      B9G9F8
      Conserved Domains (2) summary
      pfam14144
      Location:257 → 331
      DOG1; Seed dormancy control
      cl21462
      Location:179 → 230
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    2. XM_015762314.3 → XP_015617800.1  transcription factor TGAL4 isoform X1

      UniProtKB/Swiss-Prot
      Q53Q70
      UniProtKB/TrEMBL
      B9G9F8
      Conserved Domains (2) summary
      pfam14144
      Location:258 → 332
      DOG1; Seed dormancy control
      cl21462
      Location:180 → 231
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    RNA

    1. XR_010737260.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q53Q70.1 GenPept UniProtKB/Swiss-Prot:Q53Q70

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