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    LOC4327613 uncharacterized LOC4327613 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327613, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327613
    Gene description
    uncharacterized LOC4327613
    Locus tag
    OSNPB_010821800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 37.0), roots before flowering (RPKM 28.5) and 6 other tissues See more
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    Genomic context

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    See LOC4327613 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35694165..35699374, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35069282..35074518, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription factor WRKY19-like Neighboring gene transcription factor WRKY45-2 Neighboring gene protein FATTY ACID EXPORT 3, chloroplastic Neighboring gene probable LRR receptor-like serine/threonine-protein kinase IRK Neighboring gene uncharacterized LOC136353775

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4327613
    Names
    Os01g0821800
    P0485B12.15
    P0703B11.24
    methionine--tRNA ligase, cytoplasmic
    methionyl-tRNA synthetase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      35694165..35699374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793295.3 → XP_015648781.1  uncharacterized protein LOC4327613

      UniProtKB/TrEMBL
      A0A0N7KDZ3, A2WWG0, Q0JI64, Q8RUP8
      Conserved Domains (2) summary
      cd10304
      Location:49 → 147
      GST_C_Arc1p_N_like; Glutathione S-transferase C-terminal-like, alpha helical domain of the Aminoacyl tRNA synthetase cofactor 1 and similar proteins
      PLN02610
      Location:169 → 409
      PLN02610; probable methionyl-tRNA synthetase
    Nucleotide Protein
    Heading Accession and Version

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