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    LOC4325393 DNA mismatch repair protein MLH1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325393, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325393
    Gene description
    DNA mismatch repair protein MLH1
    Locus tag
    OSNPB_010958900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 8.4), flowers (RPKM 8.1) and 6 other tissues See more
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    Genomic context

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    See LOC4325393 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42921075..42927071)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42268885..42274905)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene MACPF domain-containing protein At4g24290 Neighboring gene uncharacterized LOC4325392 Neighboring gene serine/arginine-rich splicing factor SR45 Neighboring gene abscisic stress-ripening protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice. Xin X, et al. J Genet Genomics, 2021 Jun 20. PMID 34257043
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice.
      Title: OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mismatched DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mismatch repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MutLalpha complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA mismatch repair protein MLH1
    Names
    Os01g0958900
    P0401G10.10
    putative MutL homolog 1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42921075..42927071
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794381.3 → XP_015649867.1  DNA mismatch repair protein MLH1

      UniProtKB/TrEMBL
      A0A0P0VD29, Q5JN46
      Conserved Domains (1) summary
      COG0323
      Location:16 → 617
      MutL; DNA mismatch repair ATPase MutL [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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