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    LOC4347002 protein XRI1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347002, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347002
    Gene description
    protein XRI1
    Locus tag
    OSNPB_090401900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 8.3), flower buds (RPKM 6.8) and 6 other tissues See more
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    Genomic context

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    See LOC4347002 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18465185..18469266)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14095760..14099858)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein TIFY 6b-like Neighboring gene plant UBX domain-containing protein 2 Neighboring gene HMG-Y-related protein A Neighboring gene putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in female meiotic nuclear division IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in male meiotic nuclear division IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein XRI1
    Names
    OSJNBb0014M19.5
    Os09g0401900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      18465185..18469266
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755381.3 → XP_015610867.1  protein XRI1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XLY6, B8AT06, Q0J1X8, Q69MW8

    2. XM_015755382.3 → XP_015610868.1  protein XRI1 isoform X2

      UniProtKB/TrEMBL
      B8AT06
    Nucleotide Protein
    Heading Accession and Version

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