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    LOC4327833 V-type proton ATPase subunit B 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327833, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327833
    Gene description
    V-type proton ATPase subunit B 2
    Locus tag
    OSNPB_010711000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1142C05.1
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    Genomic context

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    See LOC4327833 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30124994..30130651)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29536672..29542393)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene phospholipase A1-II 5-like Neighboring gene uncharacterized LOC136357538 Neighboring gene probable mitochondrial-processing peptidase subunit beta, mitochondrial Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g68400

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ATP metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar acidification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proton-transporting V-type ATPase, V1 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit B 2
    Names
    Os01g0711000
    P0456F08.26
    putative vacuolar ATPase B subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30124994..30130651
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762491.3 → XP_015617977.1  V-type proton ATPase subunit B 2 isoform X1

      UniProtKB/TrEMBL
      A3BCW4
      Conserved Domains (4) summary
      cd01135
      Location:120 → 407
      V_A-ATPase_B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi ...
      TIGR01040
      Location:48 → 515
      V-ATPase_V1_B; V-type (H+)-ATPase V1, B subunit
      pfam00306
      Location:423 → 509
      ATP-synt_ab_C; ATP synthase alpha/beta chain, C terminal domain
      pfam02874
      Location:52 → 118
      ATP-synt_ab_N; ATP synthase alpha/beta family, beta-barrel domain

    2. XM_015763794.3 → XP_015619280.1  V-type proton ATPase subunit B 2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0V7A5, A3BCW4, Q0JJX1, Q7F369, Q9ASE0
      Conserved Domains (1) summary
      TIGR01040
      Location:20 → 487
      V-ATPase_V1_B; V-type (H+)-ATPase V1, B subunit

    3. XM_015764464.3 → XP_015619950.1  V-type proton ATPase subunit B 2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0V7A5, A3BCW4, Q0JJX1, Q7F369, Q9ASE0
      Conserved Domains (1) summary
      TIGR01040
      Location:20 → 487
      V-ATPase_V1_B; V-type (H+)-ATPase V1, B subunit
    Nucleotide Protein
    Heading Accession and Version

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