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    LOC4330573 chromatin structure-remodeling complex protein BSH [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330573, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330573
    Gene description
    chromatin structure-remodeling complex protein BSH
    Locus tag
    OSNPB_020723700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 14.4), leaves after flowering (RPKM 13.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30563649..30566707)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30071922..30074919)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein IAA8-like Neighboring gene uncharacterized LOC4330572 Neighboring gene zinc finger protein CONSTANS-LIKE 9 Neighboring gene uncharacterized LOC4330575 Neighboring gene nucleotide-sugar uncharacterized transporter 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromatin structure-remodeling complex protein BSH
    Names
    Os02g0723700
    P0685G12.19
    putative SNF5 homolog BSH (bsh)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30563649..30566707
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767674.3 → XP_015623160.1  chromatin structure-remodeling complex protein BSH isoform X1

      UniProtKB/TrEMBL
      B9F2G2
      Conserved Domains (1) summary
      pfam04855
      Location:22 → 158
      SNF5; SNF5 / SMARCB1 / INI1

    2. XM_015767675.2 → XP_015623161.1  chromatin structure-remodeling complex protein BSH isoform X2

      UniProtKB/TrEMBL
      B9F2G2
      Conserved Domains (1) summary
      pfam04855
      Location:22 → 158
      SNF5; SNF5 / SMARCB1 / INI1
    Nucleotide Protein
    Heading Accession and Version

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