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    LOC4326385 leucine-rich repeat extensin-like protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326385, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326385
    Gene description
    leucine-rich repeat extensin-like protein 4
    Locus tag
    OSNPB_010594300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326385 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (23859720..23861821)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (23285227..23287281)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable sulfate transporter 3.5 Neighboring gene uncharacterized LOC136355414 Neighboring gene transcription factor TCP20 Neighboring gene uncharacterized LOC4326386

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat extensin-like protein 4
    Names
    B1103C09.1-1
    B1103C09.1-2
    Os01g0594300
    P0451D05.14-1
    P0451D05.14-2
    extensin precursor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      23859720..23861821
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769752.3 → XP_015625238.1  leucine-rich repeat extensin-like protein 4

      UniProtKB/TrEMBL
      B8AB49, Q0JLK1, Q5ZB68, Q5ZC49, Q7F5C2, Q8L3T8
      Conserved Domains (3) summary
      PLN00113
      Location:82 → 350
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      pfam04554
      Location:489 → 564
      Extensin_2; Extensin-like region
      sd00033
      Location:172 → 191
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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