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    LOC4336220 kelch repeat-containing protein At3g27220 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336220, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336220
    Gene description
    kelch repeat-containing protein At3g27220
    Locus tag
    OSNPB_040487100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336220 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24836334..24840564)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24339587..24343860)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene malate synthase-like Neighboring gene uncharacterized LOC4336219 Neighboring gene probable inactive receptor kinase At1g27190 Neighboring gene DNA-directed RNA polymerases II and IV subunit 5A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kelch repeat-containing protein At3g27220
    Names
    Os04g0487100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      24836334..24840564
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780322.3 → XP_015635808.1  kelch repeat-containing protein At3g27220

      UniProtKB/TrEMBL
      A0A0P0WBM8, A2XUV4, Q25A88, Q7XSB4
      Conserved Domains (4) summary
      PHA03098
      Location:189 → 382
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:156 → 201
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:156 → 202
      Kelch_1; Kelch motif
      pfam13418
      Location:104 → 150
      Kelch_4; Galactose oxidase, central domain
    Nucleotide Protein
    Heading Accession and Version

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