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    LOC4339429 CLP protease regulatory subunit CLPX1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339429, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4339429
    Gene description
    CLP protease regulatory subunit CLPX1, mitochondrial
    Locus tag
    OSNPB_050533900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 19.7), roots after flowering (RPKM 11.1) and 6 other tissues See more
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    Genomic context

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    See LOC4339429 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26618621..26622281)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26500557..26504261)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339427 Neighboring gene uncharacterized LOC4339428 Neighboring gene pentatricopeptide repeat-containing protein At3g49240, mitochondrial Neighboring gene uncharacterized LOC4339431

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CLP protease regulatory subunit CLPX1, mitochondrial; CLP protease regulatory subunit CLPX3, mitochondrial
    Names
    Os05g0533900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26618621..26622281
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783525.3 → XP_015639011.1  CLP protease regulatory subunit CLPX3, mitochondrial isoform X1

      UniProtKB/TrEMBL
      B9FLA8
      Conserved Domains (3) summary
      smart01086
      Location:321 → 411
      ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
      COG1220
      Location:48 → 408
      HslU; ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
      cl21455
      Location:110 → 314
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_015783526.3 → XP_015639012.1  CLP protease regulatory subunit CLPX1, mitochondrial isoform X2

      UniProtKB/TrEMBL
      B8B085, B9FLA8
      Conserved Domains (1) summary
      PRK05342
      Location:43 → 410
      clpX; ATP-dependent Clp protease ATP-binding subunit ClpX

    RNA

    1. XR_010741368.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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