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    LOC4327164 putative glucose-6-phosphate 1-epimerase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327164, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327164
    Gene description
    putative glucose-6-phosphate 1-epimerase
    Locus tag
    OSNPB_010658700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 23.9), flower buds (RPKM 6.0) and 3 other tissues See more
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    Genomic context

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    See LOC4327164 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27374217..27378292, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26791764..26795996, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 25 Neighboring gene sphinganine C4-monooxygenase 2 Neighboring gene common plant regulatory factor 1 Neighboring gene V-type proton ATPase subunit E

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glucose-6-phosphate 1-epimerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative glucose-6-phosphate 1-epimerase
    Names
    Aldose 1-epimerase-like
    Os01g0658700
    P0684E06.5-1
    P0694A04.42-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      27374217..27378292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795005.3 → XP_015650491.1  putative glucose-6-phosphate 1-epimerase

      UniProtKB/TrEMBL
      A0A0P0V655, A2WTF0, A2ZW69, Q0JKP9, Q5SMZ1
      Conserved Domains (1) summary
      cd09020
      Location:27 → 298
      D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like
    Nucleotide Protein
    Heading Accession and Version

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