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    LOC4347921 uncharacterized LOC4347921 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347921, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347921
    Gene description
    uncharacterized LOC4347921
    Locus tag
    OSNPB_090571500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347921 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (27256502..27259288, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22811225..22814085, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene putative pectinesterase 14 Neighboring gene protein SRC2 homolog Neighboring gene peptidyl-prolyl cis-trans isomerase CYP19-3 Neighboring gene ethylene-responsive transcription factor ERF096 Neighboring gene uncharacterized LOC136351728

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347921
    Names
    B1331F11.10-1
    B1331F11.10-2
    Os09g0571500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      27256502..27259288 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795883.3 → XP_015651369.1  uncharacterized protein LOC4347921

      UniProtKB/TrEMBL
      A0A0P0XQL8, Q651A9
      Conserved Domains (1) summary
      cd00519
      Location:166 → 356
      Lipase_3; Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of ...
    Nucleotide Protein
    Heading Accession and Version

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