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    LOC4338866 heat shock 70 kDa protein BIP4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338866, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4338866
    Gene description
    heat shock 70 kDa protein BIP4-like
    Locus tag
    OSNPB_050428600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BIP4; OsBiP4
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    Genomic context

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    See LOC4338866 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21140019..21142291, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21033759..21036035, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280864 Neighboring gene beta-galactosidase 7 Neighboring gene uncharacterized LOC4338865 Neighboring gene potassium channel AKT2-like Neighboring gene uncharacterized LOC107281116 Neighboring gene serine hydroxymethyltransferase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice. Wakasa Y, et al. Planta, 2012 Nov. PMID 22824965
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Os05g0428600 levels were positively correlated with stress levels in the endoplasmic reticulum
      Title: Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of endoplasmic reticulum chaperone complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum lumen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat shock 70 kDa protein BIP4
    Names
    Heat shock 70 kDa protein BIP4
    LOC_Os05g35400
    Luminal-binding protein 4
    OSJNBb0048I21.2
    Os05g0428600
    P0636F09.18
    luminal-binding protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420436.1 → NP_001407365.1  heat shock 70 kDa protein BIP4 precursor

      Status: VALIDATED

      Source sequence(s)
      AK106696, AP014961, CI232136
      UniProtKB/Swiss-Prot
      A0A0P0XCZ2, Q6Z058, Q75HQ0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      21140019..21142291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75HQ0.1 GenPept UniProtKB/Swiss-Prot:Q75HQ0

    Gene LinkOut

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    Research Materials