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    LOC4331760 rhamnogalacturonan I rhamnosyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331760, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331760
    Gene description
    rhamnogalacturonan I rhamnosyltransferase 1
    Locus tag
    OSNPB_030169000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331760 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3727704..3731767, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3716959..3721152, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene methyltransferase FGSG_00040 Neighboring gene uncharacterized LOC4331759 Neighboring gene ribulose-phosphate 3-epimerase, chloroplastic-like Neighboring gene glutathione S-transferase T3-like Neighboring gene pentatricopeptide repeat-containing protein At5g56310 Neighboring gene uncharacterized LOC4331763

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rhamnogalacturonan I rhamnosyltransferase 1
    Names
    O-fucosyltransferase 3
    Os03g0169000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      3727704..3731767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775250.3 → XP_015630736.1  rhamnogalacturonan I rhamnosyltransferase 1

      UniProtKB/TrEMBL
      A0A0P0VTL9, B8APA7, Q8S7V6
      Conserved Domains (1) summary
      cd11299
      Location:62 → 386
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    Nucleotide Protein
    Heading Accession and Version

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