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    LOC4337655 DNA repair protein RAD51 homolog 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337655, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337655
    Gene description
    DNA repair protein RAD51 homolog 2
    Locus tag
    OSNPB_050121700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 1.6), flowers (RPKM 1.1) and 6 other tissues See more
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    Genomic context

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    See LOC4337655 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (1187109..1203193, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (1172058..1190649, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL10c Neighboring gene AP2-like ethylene-responsive transcription factor TOE3 Neighboring gene uncharacterized LOC136356462 Neighboring gene endochitinase A Neighboring gene probable sugar phosphate/phosphate translocator At3g11320

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables four-way junction DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Rad51B-Rad51C-Rad51D-XRCC2 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in replication fork IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair protein RAD51 homolog 2
    Names
    Os05g0121700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      1187109..1203193 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783845.3 → XP_015639331.1  DNA repair protein RAD51 homolog 2

      UniProtKB/TrEMBL
      B8AXC4, B9FM74, Q0DL59, Q60F40
      Conserved Domains (1) summary
      cl38936
      Location:82 → 335
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RNA

    1. XR_010741292.1 RNA Sequence

    2. XR_003242506.2 RNA Sequence

    3. XR_010741290.1 RNA Sequence

    4. XR_010741289.1 RNA Sequence

    5. XR_010741291.1 RNA Sequence

    6. XR_010741286.1 RNA Sequence

    7. XR_010741288.1 RNA Sequence

    8. XR_010741287.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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