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    LOC4327486 protein MOR1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327486, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327486
    Gene description
    protein MOR1-like
    Locus tag
    OSNPB_010816400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MOR1; OsJ_03864
    Expression
    Ubiquitous expression in flowers (RPKM 26.7), roots after flowering (RPKM 24.9) and 6 other tissues See more
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    Genomic context

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    See LOC4327486 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    52
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35312501..35329580, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34705485..34722560, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g15010, mitochondrial Neighboring gene NAC domain-containing protein 68-like Neighboring gene protein MOR1-like Neighboring gene leucine-rich repeat receptor protein kinase HPCA1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule plus end polymerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule plus-end binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in establishment or maintenance of microtubule cytoskeleton polarity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule polymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic spindle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule plus-end IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in spindle pole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein MOR1
    Names
    B1148D12.6-1
    LOC_Os01g60040
    OSJNBa0085D07.49-1
    Protein GEM1
    Protein MICROTUBULE ORGANIZATION 1
    putative microtubule bundling polypeptide TMBP200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409114.1 → NP_001396043.1  protein MOR1

      Status: VALIDATED

      Source sequence(s)
      AK107599, AK121331, AP014957, CB676521, CF307291, CI132806, CI673700
      UniProtKB/Swiss-Prot
      A0A0P0V9P1, Q5N749
      UniProtKB/TrEMBL
      B8ABA5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      35312501..35329580 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761291.2 → XP_015616777.1  protein MOR1 isoform X1

      UniProtKB/TrEMBL
      B8ABA5
      Conserved Domains (1) summary
      sd00044
      Location:854 → 882
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5N749.1 GenPept UniProtKB/Swiss-Prot:Q5N749

    Gene LinkOut

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