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    LOC4337351 oryzain beta chain-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337351, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337351
    Gene description
    oryzain beta chain-like
    Locus tag
    OSNPB_040670200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 73.4), mature seeds (RPKM 67.7) and 6 other tissues See more
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    Genomic context

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    See LOC4337351 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34693170..34696616, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34173350..34176726, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene methylthioribose kinase 2-like Neighboring gene reticulon-like protein B11 Neighboring gene uncharacterized protein At4g06744 Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 Neighboring gene cysteine protease 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning and gibberellin-induced expression of multiple cysteine proteinases of rice seeds (oryzains). Watanabe H, et al. J Biol Chem, 1991 Sep 5. PMID 1885617
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oryzain beta chain
    Names
    H0818H01.14
    LOC_Os04g57440
    OSJNBa0043A12.28
    NP_001389384.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402455.1 → NP_001389384.1  oryzain beta chain precursor

      Status: VALIDATED

      Source sequence(s)
      AK109371, CI070300, CI290840
      UniProtKB/Swiss-Prot
      B7F253, P25777, Q0J962, Q259Q5, Q7XR57, Q8S4X9
      UniProtKB/TrEMBL
      A0A0P0WGF4, A2XYT1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34693170..34696616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P25777.2 GenPept UniProtKB/Swiss-Prot:P25777

    Gene LinkOut

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