U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC4339730 carbohydrate-binding X8 domain-containing protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339730, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4339730
    Gene description
    carbohydrate-binding X8 domain-containing protein
    Locus tag
    OSNPB_050581900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4339730 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29136315..29138392, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28950833..28953083, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339728 Neighboring gene uncharacterized LOC4339729 Neighboring gene uncharacterized LOC4339731 Neighboring gene protein REDUCED WALL ACETYLATION 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    carbohydrate-binding X8 domain-containing protein
    Names
    Os05g0581900

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      29136315..29138392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782633.3 → XP_015638119.1  carbohydrate-binding X8 domain-containing protein isoform X5

      UniProtKB/TrEMBL
      B8AX62
      Conserved Domains (1) summary
      smart00768
      Location:108 → 192
      X8; Possibly involved in carbohydrate binding

    2. XM_066310441.1 → XP_066166538.1  carbohydrate-binding X8 domain-containing protein isoform X7

      UniProtKB/TrEMBL
      B8AX62

    3. XM_015782631.3 → XP_015638117.1  carbohydrate-binding X8 domain-containing protein isoform X3

      UniProtKB/TrEMBL
      B8AX62
      Conserved Domains (1) summary
      smart00768
      Location:105 → 199
      X8; Possibly involved in carbohydrate binding

    4. XM_015782630.3 → XP_015638116.1  carbohydrate-binding X8 domain-containing protein isoform X2

      UniProtKB/TrEMBL
      B8AX62
      Conserved Domains (1) summary
      smart00768
      Location:107 → 201
      X8; Possibly involved in carbohydrate binding

    5. XM_015782629.3 → XP_015638115.1  carbohydrate-binding X8 domain-containing protein isoform X1

      UniProtKB/TrEMBL
      B8AX62, Q0DFM5, Q6L5D9
      Conserved Domains (1) summary
      smart00768
      Location:108 → 202
      X8; Possibly involved in carbohydrate binding

    6. XM_015782634.3 → XP_015638120.1  carbohydrate-binding X8 domain-containing protein isoform X6

      UniProtKB/TrEMBL
      B8AX62
      Conserved Domains (1) summary
      smart00768
      Location:107 → 191
      X8; Possibly involved in carbohydrate binding

    7. XM_066310442.1 → XP_066166539.1  carbohydrate-binding X8 domain-containing protein isoform X8

      UniProtKB/TrEMBL
      B8AX62

    8. XM_015782632.3 → XP_015638118.1  carbohydrate-binding X8 domain-containing protein isoform X4

      UniProtKB/TrEMBL
      B8AX62
      Conserved Domains (1) summary
      smart00768
      Location:103 → 197
      X8; Possibly involved in carbohydrate binding
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials