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    LOC4337293 uncharacterized LOC4337293 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337293, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4337293
    Gene description
    uncharacterized LOC4337293
    Locus tag
    OSNPB_040662100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337293 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34304350..34306381, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33784316..33786480, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome non-ATPase regulatory subunit 7 homolog A Neighboring gene uncharacterized LOC4337292 Neighboring gene indole-3-acetic acid-induced protein ARG7 Neighboring gene indole-3-acetic acid-induced protein ARG7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Mpp10 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4337293
    Names
    Os04g0662100
    U3 small nucleolar ribonucleoprotein protein IMP3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34304350..34306381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778558.3 → XP_015634044.1  uncharacterized protein LOC4337293

      UniProtKB/TrEMBL
      A2XYL0, A3AYB0, Q7XM24
      Conserved Domains (1) summary
      COG0522
      Location:1 → 167
      RpsD; Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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